1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tatgagaagcttttggatttctgttgttgtttgttttgatagcaaaaatatcttcttttgacaacatttatcttggctttcttgcatgtttggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTGGAGATTCTACTTCTTAAGCAACCCATACAAGATAATTGCCTAGTACTCA
species | Zea mays |
transcript | GRMZM2G409430_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACCGACTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAG ATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTGEST: gi|211170139|gb|FL323713.1|FL323713
genomic: ACCGATTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAGgttagttatg ... tggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTG
EST: ACCGATTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAG ATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTGEST: gi|7216514|gb|AW562636.1|AW562636
genomic: ACCGATTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAGgttagttatg ... tggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTG
EST: ACCGATTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAG ATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTG
genomic: ACCGATTAGTCTATGCTCAAGTTTTATGTTGTCATCCTTTAACTTGGCAGgttagttatg ... tggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTG
aaatatcttcttttgacaacatttatcttggctttcttgcatgtttggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTGGAGATTCTACTTCTTAAGCAACCCATACAAGATAATTGCCTAGTACTCA
ttttgac putative branch site (score: 30)
ttctc putative PPT
aacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgagaagcttttggatttctgttgttgtttgttttgatagcaaaaatatcttcttttgacaacatttatcttggctttcttgcatgtttggttctcagATCGCGCCGACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGACTCTTGGAGATTCTACTTCTTAAGCAACCCATACAAGATAATTGCCTAGTACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - gcttttg
- - - - - - - - - - ctgttgt
- - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt