1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acttccacatgtagcttgcattttccatggttctcaactgaactcaacgttagcttaaactaaggattcatatctaataactgcttgtttctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATACTGGTTCCAGCAAGCTCGTGATAAAGTTTGTCTTGATAGAATTGCTCAAC
species | Zea mays |
transcript | GRMZM2G409430_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAG ATTGCTGGCATTTATCATTGGAAGCATGGACGAAAAGGAACTGGTGTATACEST: gi|166685515|gb|EG211712.1|EG211712
genomic: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAGgtaaaccgta ... ctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATAC
EST: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAG ATTGCTGGCATTTATCATTGGEST: gi|211170139|gb|FL323713.1|FL323713
genomic: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAGgtaaaccgta ... ctttttttagATTGCTGGCATTTATCGTTGG
EST: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAG ATTGCTGGCATTTATCATTGGAAGCATGGACGAAAAGGAACTGGTGTATACEST: gi|24766432|gb|CA401586.1|CA401586
genomic: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAGgtaaaccgta ... ctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATAC
EST: TCATCATGAAG ATTGCTGGCATTTATCATTGGAAGCATGGACGAAAAGGAACTGGTGTATACEST: gi|7216514|gb|AW562636.1|AW562636
genomic: TCATCATGAAGgtaaaccgta ... ctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATAC
EST: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAG ATTGCTGGCATTTATCATTGGAAGCATGGACGAAAAGGAACTGGTGTATAC
genomic: AAATTTGCCGATTGTACGAACTGGAGAATGTTAGTACAATCATCATGAAGgtaaaccgta ... ctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATAC
aacgttagcttaaactaaggattcatatctaataactgcttgtttctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATACTGGTTCCAGCAAGCTCGTGATAAAGTTTGTCTTGATAGAATTGCTCAAC
taataac putative branch site (score: 26)
ctgcttgtttcttttt CT-rich tract
attcatatctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttccacatgtagcttgcattttccatggttctcaactgaactcaacgttagcttaaactaaggattcatatctaataactgcttgtttctttttttagATTGCTGGCATTTATCGTTGGAAGCATGGACGAAAAGGAACTGGTGTATACTGGTTCCAGCAAGCTCGTGATAAAGTTTGTCTTGATAGAATTGCTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - -cacatgt
- - - - - - -gcttgca
- - - - - - - - - - - - ccatggt
- - - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat