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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTGgtatgcctgttttcttcatttttccaacaagttggtgcttttgttagatgcttcctgtctgaagtttttcttcatgtag

Basic information

species Zea mays
transcript GRMZM2G409430_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G409430_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g54240.2 (Oryza sativa), 5'ss of exon 4
ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTGgtatgcctgttttctt---catttttccaacaagttggtgcttttgttagatgcttcctgtctgaag-----tttttcttcatgtag
 |||||||||| ||||||||||| |||| ||| || |||||||| || ||||||||||||||||||||||||||| || | |||||||   |  | ||  |   |  ||    ||||| | ||  | | |  || ||||     ||||| ||| | |||
GTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGTTGGATGGCTTGATATTGTGgtaagc-tattttcttgcacgctattttatagacatgtcagttttgattgaatcctacaatcagaagttgttttttttttcttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101391554|gb|EB817713.1|EB817713
EST:     ACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTG                         GTGAATATGCTACGGTTTCATGGATCGTACCAATTAGATCAGATGGATAGC
genomic: ACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTGgtatgcctgt ... cttcatgtagGTGAATATGCTACGGTTTCATGGATCGTACCAATTAGATCAGATGGATAGC
EST: gi|78113107|gb|DV531501.1|DV531501
EST:     ACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTG                         GTGAATATGCTACGGTTTCATGGATC
genomic: ACTGGAATGGTTTGTCAGCAGCACTTTCGGTTGGATGGCTTGATATTGTGgtatgcctgt ... cttcatgtagGTGAATATGCTACGGTTTCATGGATC