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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttcaatatttttagcatcttccaatcacatggtctactgttttgtttatacagactcccagtatcatgtggctatcccagcatgtaattgctat...

Basic information

species Zea mays
transcript GRMZM2G409430_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101391554|gb|EB817713.1|EB817713
EST:     CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG                         ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG
genomic: CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttca ... cattttgtagATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG
EST: gi|71423081|gb|DR805945.1|DR805945
EST:     CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAA-CTCGTTAACTTACAG                         ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG
genomic: CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttca ... cattttgtagATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG
EST: gi|149010019|gb|EE041829.2|EE041829
EST:     CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG                         ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGT
genomic: CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttca ... cattttgtagATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGT
EST: gi|149015081|gb|EE044836.2|EE044836
EST:     CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG                         ATTGTTGAAGACGATCCTGATTACTGGAATGG
genomic: CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttca ... cattttgtagATTGTTGAAGACGATCCTGATTACTGGAATGG
EST: gi|78113107|gb|DV531501.1|DV531501
EST:     CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG                         ATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG
genomic: CGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttca ... cattttgtagATTGTTGAAGACGATCCTGATTACTGGAATGGTTTGTCAGCAGCACTTTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAGgttggtttcaatatttttagcatcttccaatcacatggtctactgttttgtttatacagactcccagtatcatgtggctatcccagcatgtaattgctat

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