1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGGCAATATGTGCTTGAATACAGCAAAACCATTGGCAGTCTCCTTGGGAACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatctctatgtgttatgctgttttatgttctattacgggtgatctggataaattcttacatgatttagttaaacctcaaatgttttctctcccctgtaaaaaacactttaaag
species | Zea mays |
transcript | GRMZM2G409430_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|101391554|gb|EB817713.1|EB817713
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|71423081|gb|DR805945.1|DR805945
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|149010019|gb|EE041829.2|EE041829
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|101401938|gb|EB822595.1|EB822595
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|71449560|gb|DR830610.1|DR830610
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|149015081|gb|EE044836.2|EE044836
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|78113107|gb|DV531501.1|DV531501
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATAEST: gi|18963165|gb|BM660276.1|BM660276
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
EST: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAG GCTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
genomic: ACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatct ... cactttaaagGTTAGGGAGAAACCCACAAGTTTAAGGGCTGCTTGGGAGTTGCTGGAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCAATATGTGCTTGAATACAGCAAAACCATTGGCAGTCTCCTTGGGAACCCAGACCCTTCTGGTTTCATGATTGAAGAACCCAAGACAATTCTTAAGgtctctatctctatgtgttatgctgttttatgttctattacgggtgatctggataaattcttacatgatttagttaaacctcaaatgttttctctcccctgtaaaaaacactttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC