Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTAGTTTCTTGGTCCATGTATAACACTGAGTTGAGGTTACCAGCTCACTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgtcgatttctcccttcttttacatttgttcagctactgtattctcttcgagggttgcccttgtcacctgcaattatgaatctacagcttttgtcatcgaggaagtttaacagattttggtttctctaccatgatctgtttccattgggcag

Basic information

species Zea mays
transcript GRMZM2G374574_T02
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37379576|gb|CF626532.1|CF626532
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|5608110|gb|AI901777.1|AI901777
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|32942672|gb|CF047491.1|CF047491
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|211362734|gb|FL471680.1|FL471680
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|5650208|gb|AI920568.1|AI920568
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|31558796|gb|CD528008.1|CD528008
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|32933711|gb|CF038523.1|CF038523
EST:     CTCAGCAAACGGTTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: gi|211362733|gb|FL471679.1|FL471679
EST:     CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG                         GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 5

GATTTAGTTTCTTGGTCCATGTATAACACTGAGTTGAGGTTACCAGCTCACTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAACAAGAACCCCCGTTTGTTTCAGTACATGTAAATAAAAGGGATTTTTTGT




<











<


<