1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcattcgtcctcacatgctacatctcttacatacatccagttgtggtttttgagaagtgtggttccttgattcttgctcttgtttgtag
species | Zea mays |
transcript | GRMZM2G374574_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAAAGTCCTGCGATCGTGAAT CTACTCGAGA-TTTGTCAGAATTTCACCCNTGAGCAGCAGCATGCGTTCTGEST: gi|26558996|gb|CA831231.1|CA831231
genomic: AAAAGTCCTGCGATCGTGAATgtaagctcat ... ttgtttgtagCTACTCGAGATTTTGTCAGAA-TTCACCCCTGAGCAGCAGCATGCGTTCTG
EST: ACATAAAATTTGATCATGGATACACTGCTAAAAGTCCTGCGATCGTGAAT CTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCEST: gi|87157724|gb|DY402513.1|DY402513
genomic: ACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcat ... ttgtttgtagCTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGC
EST: ACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAAT CTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGCEST: gi|211367974|gb|FL128469.1|FL128469
genomic: ACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcat ... ttgtttgtagCTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGC
EST: ACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAAT CTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGCEST: gi|31558796|gb|CD528008.1|CD528008
genomic: ACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcat ... ttgtttgtagCTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGC
EST: GGATATACTGCTAAAAGTCCTGCGATCGTGAAT CTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGC
genomic: GGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcat ... ttgtttgtagCTACTCGAGATTTTGTCAGAATTCACCCCTGAGCAGCAGCATGCGTTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAAAGTCCTGCGATCGTGAATgtaagctcattcgtcctcacatgctacatctcttacatacatccagttgtggtttttgagaagtgtggttccttgattcttgctcttgtttgtag
- - - - - - - - - - - - - - - - CATGGA