1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgctgctgtcgatttctcccttcttttacatttgttcagctactgtattctcttcgagggttgcccttgtcacctgcaattatgaatctacagcttttgtcatcgaggaagtttaacagattttggtttctctaccatgatctgtttccattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAACAAGAACCCCCGTTTGTTTCAGTACATGTAAATAAAAGGGATTTTTTGT
species | Zea mays |
transcript | GRMZM2G374574_T02 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|5608110|gb|AI901777.1|AI901777
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|32942672|gb|CF047491.1|CF047491
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|211362734|gb|FL471680.1|FL471680
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|5650208|gb|AI920568.1|AI920568
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|31558796|gb|CD528008.1|CD528008
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|32933711|gb|CF038523.1|CF038523
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGTTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAAEST: gi|211362733|gb|FL471679.1|FL471679
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
EST: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAG GCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
genomic: CTCAGCAAACGGCTTCAAGGGCGAGAGCCCCAGTCCTCACTCGGATGCAGgtgctgctgt ... cattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAA
cgaggaagtttaacagattttggtttctctaccatgatctgtttccattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAACAAGAACCCCCGTTTGTTTCAGTACATGTAAATAAAAGGGATTTTTTGT
gtttaac putative branch site (score: 5)
tctgtttcc putative PPT
aagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgctgtcgatttctcccttcttttacatttgttcagctactgtattctcttcgagggttgcccttgtcacctgcaattatgaatctacagcttttgtcatcgaggaagtttaacagattttggtttctctaccatgatctgtttccattgggcagGCTAAGCTATAGTAATTGAGGATGTGCGCCTTGAGTGAGGATGTGCGCCAACAAGAACCCCCGTTTGTTTCAGTACATGTAAATAAAAGGGATTTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC