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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggccattttattttgatacccttttattgtttgctgtggcccctctttctcacacttatgctaaaattaggttgcacgcttttcagGGCTTAATCCGTCTTCTCTCAATATGTGCAAGTGGATCCCTGCTGGCAGTTAAAACACTACTTCTTCTTGGGATCAGCGGCACTCTTAAAGATATCCTTT

Basic information

species Zea mays
transcript GRMZM2G374574_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374574_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 4
gtatgggccattttattttgatacccttttattgtttgctgtggcccctctttctcacacttatgctaaaattaggttgcacgctttt-cagGGCTTAATCCGTCTTCTCTCAATATGTGCAAGTGGATCCCTGCTGGCAGTTAAAACACTACTTCTTCTTGGGATCAGCGGCACTCTTAAAGATATCCTTT
      |   ||  |  |  | ||  |   |||| |||||        |||||       ||  |  ||| |  |  |   || |  | |||||||||||||| ||||| |||||||||||||  || || |   | | ||  |||||  | ||||  ||||  ||||| |||| |||||||||||| ||| 
------gtagttgaagatgtacactttcagattgattgct------tatcttt-----gtttgggtcaaattctgacttatcggtcatgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtggcccctctttctcacacttatgctaaaattaggttgcacgcttttcagGGCTTAATCCGTCTTCTCTCAATATGTGCAAGTGGATCCCTGCTGGCAGTTAAAACACTACTTCTTCTTGGGATCAGCGGCACTCTTAAAGATATCCTTT
                           tgctaaa  putative branch site (score: 2)
                                             cgcttttc  putative PPT
                        ttatgctaaaatta  TA-rich tract