1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGTTTGACATGTCATCCCTCCACATATTTTCACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAGgtaatgttctgtcctttttatccaagttaatgtatgtaaaagtgtggcactaaataaaccttggaatctgcag
species | Zea mays |
transcript | GRMZM2G374574_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAG TCGGAATCCCTGGGGGATAACATAAAATTTGATCATGGATACACTGCTAAAEST: gi|67026765|gb|CO455514.1|CO455514
genomic: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAGgtaatgttct ... gaatctgcagTCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAA
EST: CAAGAAATTTGCGAG TCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAAEST: gi|87157724|gb|DY402513.1|DY402513
genomic: CAAGAAATTTGGGAGgtaatgttct ... gaatctgcagTCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAA
EST: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAG TCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAAEST: gi|211367974|gb|FL128469.1|FL128469
genomic: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAGgtaatgttct ... gaatctgcagTCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAA
EST: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAG TCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAA
genomic: CACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAGgtaatgttct ... gaatctgcagTCGGAATCCCTGGTGGATAACATAAAATTTGATCATGGATATACTGCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGACATGTCATCCCTCCACATATTTTCACCTCAAGAACTTGACTATCTAATATGTGGTCGACAAGAAATTTGGGAGgtaatgttctgtcctttttatccaagttaatgtatgtaaaagtgtggcactaaataaaccttggaatctgcag
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA