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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCGCTTAATAGGTCAAGTGATCGCAAAAGTCCTGCAAGATGGCAGACTTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacagagaagctctatttccaagtgctttgctttcattttgttttgctttgttttatgtattaattagttgtttgtattcacttttcacgacttaatgtgttgcaattggccag

Basic information

species Zea mays
transcript GRMZM2G374574_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374574_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g01170.1 (Oryza sativa), 5'ss of exon 3
TTTCCGCTTAATAGGTCAAGTGATCGCAAAAGTCCTGCAAGATGGCAGACTTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacagagaagctctatttccaagtgctttgctttcattttgttttgctttgttttatgtattaattagt-tgtttgtattcacttttcacgacttaatgtgttgcaattggccag
|||||||||  | || | |||||| ||||||||  |||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||| ||  | | |  ||   |     | |       |||| |||||||    ||||||||||  |  | ||||| ||     ||  ||| |    | |                      
TTTCCGCTTGGTTGGGCGAGTGATGGCAAAAGTTTTGCAAGATGGAAGACTTTTAGATTTGCCTCTATCAACAGCACTTTATAAGCTTATACTTGGACAAgtaagtg-atatactcttactggattaatatcagtttttccttttgttaca-tttgttttattga--agttagtctgaacaaatgaactgtatgtgccag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521271|gb|BU080082.1|BU080082
EST:     TTTATCAACAGCG-TTTATAAGCTTATACTTGGACAG                         GAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
genomic: TTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacag ... aattggccagGAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
EST: gi|26558996|gb|CA831231.1|CA831231
EST:     TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAG                         GAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
genomic: TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacag ... aattggccagGAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
EST: gi|87157724|gb|DY402513.1|DY402513
EST:     TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAG                         GAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
genomic: TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacag ... aattggccagGAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
EST: gi|211367975|gb|FL128470.1|FL128470
EST:     TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAG                         GAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA
genomic: TTTTAGATTTGCCTTTATCAACAGCGTTTTATAAGCTTATACTTGGACAGgtatgtacag ... aattggccagGAACTTGATTTGTTTGACATAGTGTCATTTGATTCTGAGTTTGGGAAGACA