1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TACTTCAAATTCAACTGGGGCAGTAGAGTCCGCTGATGATGATTTGCCTAGTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtccttgctgttttatcactaaaaagtcagcttgacattctgatggttcctgctgacgggctgttgctattgtttggacag
species | Zea mays |
transcript | GRMZM2G374574_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAA GAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCAEST: gi|211367974|gb|FL128469.1|FL128469
genomic: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtc ... gtttggacagGAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
EST: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAA GAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCAEST: gi|211433107|gb|FL121103.1|FL121103
genomic: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtc ... gtttggacagGAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
EST: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAA GAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCAEST: gi|5499463|gb|AI855330.1|AI855330
genomic: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtc ... gtttggacagGAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
EST: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAA GAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCAEST: gi|78022948|gb|DV491335.1|DV491335
genomic: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtc ... gtttggacagGAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
EST: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAA GAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
genomic: GTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtc ... gtttggacagGAAATCATGCGCAAGAAGTTGCTTTATGCGATCCTGGAAGGCCGAGGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTCAAATTCAACTGGGGCAGTAGAGTCCGCTGATGATGATTTGCCTAGTGTGATGACGTGCGCCAATTATCTGAAGCTGCCCCCCTACTCCACAAAAgtacagtgtccttgctgttttatcactaaaaagtcagcttgacattctgatggttcctgctgacgggctgttgctattgtttggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC