1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCATGTGGAAGACACCTGCTGAAAGGTGCTTCCTATGGCTTGGGGGTTTTCGTCCATCTGAGCTTTTAAAGgtgagcattgtcaggcttcgttttttttctgtgtcctcactggaaatgcaaggttgctgatttgtctgcataatggaaaatatcag
species | Zea mays |
transcript | GRMZM2G361847_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTTTAAAG CTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTGEST: gi|18659659|gb|BM500456.1|BM500456
genomic: GAGCTTTTAAAGgtgagcattg ... aaaatatcagCTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTG
EST: TGGGGGTTTTCGTCCATCTGAGCTTTTAAAG CTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTGEST: gi|44901587|gb|CK828132.1|CK828132
genomic: TGGGGGTTTTCGTCCATCTGAGCTTTTAAAGgtgagcattg ... aaaatatcagCTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTG
EST: AAAGGTGCTTCNTATGGCTT-GGGGTTTTCGTCCATCTGAGC-TTTAAAG CTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTGEST: gi|211475615|gb|FL459206.1|FL459206
genomic: AAAGGTGCTTCCTATGGCTTGGGGGTTTTCGTCCATCTGAGCTTTTAAAGgtgagcattg ... aaaatatcagCTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTG
EST: AAAGGTGCTTCCTATGGCTTGGGGGTTTTCGTCCATCTGAGCTTTTAAAG CTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTG
genomic: AAAGGTGCTTCCTATGGCTTGGGGGTTTTCGTCCATCTGAGCTTTTAAAGgtgagcattg ... aaaatatcagCTCCTAGCGAATCACCTCGAGCCTCTAACTGAGCAGCAAATGCTGGGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTGGAAGACACCTGCTGAAAGGTGCTTCCTATGGCTTGGGGGTTTTCGTCCATCTGAGCTTTTAAAGgtgagcattgtcaggcttcgttttttttctgtgtcctcactggaaatgcaaggttgctgatttgtctgcataatggaaaatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT