Sequence
atgc intronic sequence ATGC exonic sequenceACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaaatttcatctgtattagaacaaattgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 5
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaaatttcatctgtattagaacaaattgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt------------
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ACAATTCGGCGGCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtactactgcag---atttgctct----tatgtt----cgcttttgctctgaataaa-aaagccttgtttggaaaagcataggattaattctgtgaacttacctgtgcaaac
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G39050.2 (Glycine max), 5'ss of exon 5
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaaat-ttcatctgtattagaacaaattgagatgttctttttttgcttgaatgaagcgttat-ttggatatacgcatgatgg-catgactagtttt
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ACTCTCCGAAGGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAAgtaggaatatgtacttacatattttttgttaatatttgttgttacaagtgtatatcatttttctgttttcttctttctccatataataaatattactatg---
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 7
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgta--------tcactaaatttcatctgtattagaacaa--attgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt-------------------------------------------------
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ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattg-agacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcag
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G31050.3 (Glycine max), 5'ss of exon 7
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgta--------tcactaaatttcatctgtattagaacaa--attgagatgt---tctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt--------------------------------------------
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ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggccttttccgttaattttagatgaacttgtaaaattattgtgatataggttggtttgttgttcaatatgtcattattgagaccca-ataatttgtcatgttttatatatattttttgacttattttttaaatccctctttctattcattcag
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G28400.1 (Glycine max), 5'ss of exon 2
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgta--------tcactaaatttcatctgtattagaacaa--attgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt-------------------------------------------------
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ACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAATGgtaaggccttttctgttaattgtagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattg-agacccaacaacttgtcatgttttataaatatttctgaacttcttttttaaatccttgtttctatttattcag
upper sequence: GRMZM2G361847_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT3G12250.5 (Arabidopsis thaliana), 5'ss of exon 5
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaaatttcatctgtattagaacaaattg-----agatgttctttttttgcttgaatga-agcgttatttggatatacgcatgatggcatgactagtttt------------------
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ACCCTTCGTAGGCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGgtatgtatattttgcttttgttcttgttttgatttttcttatatattcctcttatttccttgtaatatctctagaagaatatctatctgtcattaccttaagcatgttattgtttcctccatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93012257|gb|EB637777.1|EB637777EST: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAG GCATATGTGCAGCAGCTGGAGAGCAGTAAGCTGAAACTTGCACAACTGGAA
genomic: GGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaa ... tctggtgaagGCATATGTGCAGCAGCTGGAGAGCAGTAAGCTGAAACTTGCACAACTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATGCGACGGCTTGCCCAAAATCGTGAGGCAGCAAGAAAAAGTCGGCTGAGGAAAAAGgtatcactaaatttcatctgtattagaacaaattgagatgttctttttttgcttgaatgaagcgttatttggatatacgcatgatggcatgactagtttt
- - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAA