Sequence
atgc intronic sequence ATGC exonic sequenceGGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATGgtaatatttcaattcgttatatctgtgcgtttctggatttgattagtctatcttgattgaatgctatctttatctctagaagtgcatctgaaattataaacttgttgttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G361847_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 7
GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATGgtaatatttca-----------------attcgttatatctgtgcgtttc-tggatttg-attagtctatcttgattgaatgctatctttatctctagaagtgca---tctgaaattataaacttgt-tgttgcag
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GGAATCTTCATCTCTAGCTCTGGAGACCAGACCCATGCCATGAGTGGAAATGgtaatttgtcatattttcatcgcttggtacccattaacattttgtgtcttgtgtacttacattgttttatctttttaacagtttatattaactgtttgctgcatgctttctaaaacattaagcttgtgttttgcag
upper sequence: GRMZM2G361847_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 5'ss of exon 8
GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATGgtaatatttcaattcgttatatctgtgcgtttctggatt-tgattagtctatct-tgattgaatgctatctttatctctagaagtgcatctgaaattataaacttgttgttgcag
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GGCATATTCATTTCAAGCTCAGGAGACCAATCCCATTCAATGAGTGGAAATGgtaaa---cctacttcttttatttgcccttcatttatttgtaatccatgcacttacagtttggggaaattgagcgtggtagcaaagccactagactttggaat------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93012257|gb|EB637777.1|EB637777EST: AATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATG GAGCTTTGACTTTTGACATAGAATATGCTAGATGGCTAGAGGACCAAAATA
genomic: AATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATGgtaatatttc ... gttgttgcagGAGCTTTGACTTTTGACATAGAATATGCTAGATGGCTAGAGGACCAAAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATCTTCATTTCTAGCTCTGGAGACCAAACCCATGCCATGAGTGGAAATGgtaatatttcaattcgttatatctgtgcgtttctggatttgattagtctatcttgattgaatgctatctttatctctagaagtgcatctgaaattataaacttgttgttgcag
- - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - AGTGGA