1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attttatggtcccatggagttctccctatttttcgatgatgcccatcttttggcagtaccttctttgtgtacacaataaatgggaggatattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG
species | Zea mays |
transcript | GRMZM2G347808_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAEST: gi|211497012|gb|FK959681.1|FK959681
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAEST: gi|211494134|gb|FK959680.1|FK959680
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAEST: gi|71762989|gb|DR960926.1|DR960926
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: TTTATACATATAGCTCNTCATCTGAAG GGAGAAACTGCTTTCATGTCGCCTCCTGGGGGTGGCCCTGACTATGCCAAAEST: gi|211494133|gb|FK959679.1|FK959679
genomic: TTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
tcttttggcagtaccttctttgtgtacacaataaatgggaggatattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG
tattttct CT-rich tract
acaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttatggtcccatggagttctccctatttttcgatgatgcccatcttttggcagtaccttctttgtgtacacaataaatgggaggatattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG
- - - - - -ccatgga
- - - - - - - - - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa