1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acacataacattgtaatagtaaaatcaacaccagttattttacgttttcccttgtatgtcaaccgatttcttactgtgtatatgatctgtctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG
species | Zea mays |
transcript | GRMZM2G347808_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGEST: gi|211494129|gb|FK959675.1|FK959675
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
EST: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGEST: gi|89758242|gb|DY687498.1|DY687498
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
EST: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGEST: gi|94477195|gb|EB706153.1|EB706153
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
EST: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGEST: gi|94480465|gb|EB709423.1|EB709423
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
EST: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGEST: gi|76015416|gb|DT942586.1|DT942586
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCC-ATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTG
EST: ------T---GATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
genomic: CTCTCATACAGATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
tttcccttgtatgtcaaccgatttcttactgtgtatatgatctgtctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG
ttcttac putative branch site (score: 13)
tctgtct putative PPT
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacataacattgtaatagtaaaatcaacaccagttattttacgttttcccttgtatgtcaaccgatttcttactgtgtatatgatctgtctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG
acacata
- - - - - - - - - - - - -caacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg