1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtctcctgtctcccctacccgcttctcagcgtagggtttgccgtttgcgaggagtacgtctcctcaaactactctctcttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCGGCGGAGGCTGCTCTCGTG
species | Zea mays |
transcript | GRMZM2G347808_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTG GGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCEST: gi|211494129|gb|FK959675.1|FK959675
genomic: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTGgtaagtctcc ... cttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
EST: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTG GGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCEST: gi|89758242|gb|DY687498.1|DY687498
genomic: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTGgtaagtctcc ... cttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
EST: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTG GGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCEST: gi|94477195|gb|EB706153.1|EB706153
genomic: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTGgtaagtctcc ... cttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
EST: CGAAGTGTACCTCTG GGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCEST: gi|94480465|gb|EB709423.1|EB709423
genomic: CGAAGTGTACCTCTGgtaagtctcc ... cttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
EST: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTG GGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
genomic: GCGATAAGGAAGCTGGGGAAGCTCTTCCGGCTTACCGAAGTGTACCTCTGgtaagtctcc ... cttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTC
agggtttgccgtttgcgaggagtacgtctcctcaaactactctctcttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCGGCGGAGGCTGCTCTCGTG
ctactctctcttcctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctcctgtctcccctacccgcttctcagcgtagggtttgccgtttgcgaggagtacgtctcctcaaactactctctcttcctgcagGGACGATTCGTATGGCGCTGGACCTCACGATGGACAGAAGAACGGGCGCTCGGCGGAGGCTGCTCTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT