1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgtatttaagtattatcagtctaacccagttgtctcatcatcttgcccgatgtttgtttaagttgaaactgacactctttatgccaaccatatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCAGTACCAGAGTGGGCGATTCCTCAAGAGAAGGATACCCATTATGATGGT
species | Zea mays |
transcript | GRMZM2G319022_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTTAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|71445420|gb|DR826470.1|DR826470
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|71764034|gb|DR961971.1|DR961971
genomic: GACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|86470789|gb|DY237159.1|DY237159
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTTTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|32838503|gb|CD978181.1|CD978181
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTTAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|60401400|gb|DN234207.1|DN234207
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|211335278|gb|FL441435.1|FL441435
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|211335279|gb|FL441436.1|FL441436
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCEST: gi|71418012|gb|DR804283.1|DR804283
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
EST: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATG CTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
genomic: GAGTTGAAGACTAGTGAAGTTCTAAAGCAGCTGAAGTTTGTAAACATGgtatgttcca ... atatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCC
gcccgatgtttgtttaagttgaaactgacactctttatgccaaccatatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCAGTACCAGAGTGGGCGATTCCTCAAGAGAAGGATACCCATTATGATGGT
aactgac putative branch site (score: 91)
tttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatttaagtattatcagtctaacccagttgtctcatcatcttgcccgatgtttgtttaagttgaaactgacactctttatgccaaccatatattcagCTAAAGAATCAGCTGGTGGACCAAAACCAGAAGCCTGCTTAAATAAATGCCAGTACCAGAGTGGGCGATTCCTCAAGAGAAGGATACCCATTATGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcca