1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagaaaccttttaacataccgtttacagatattggtgtactgatttgtttttcgagaccacctttaatcttgattatttatatttctgtccatcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGATAGCTACAAATCGTGGCAT
species | Zea mays |
transcript | GRMZM2G319022_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGAEST: gi|211529876|gb|FL034571.1|FL034571
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGAEST: gi|211526876|gb|FL034553.1|FL034553
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGAEST: gi|211526879|gb|FL034556.1|FL034556
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGAEST: gi|71418015|gb|DR804284.1|DR804284
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGAEST: gi|78082415|gb|DV510827.1|DV510827
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
EST: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAG GATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
genomic: TCAAAACTGAAAGATTGGAGGAGCATATACCAGTTTGAGTGTAAATAGAGgtttgcctgc ... catcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGA
tgtttttcgagaccacctttaatcttgattatttatatttctgtccatcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGATAGCTACAAATCGTGGCAT
tcttgat putative branch site (score: 77)
tttctgtcc putative PPT
tttaatcttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaaaccttttaacataccgtttacagatattggtgtactgatttgtttttcgagaccacctttaatcttgattatttatatttctgtccatcatccagGATCTTCCTTATGTTTGATGATTAGCTCATTGAGCAACATACAGCAACAGATAGCTACAAATCGTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - cataccg
- - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaccacc