1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagattttaccattaaattactagtgttccactgttccccataatatgtctcttaagatttttttttatttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAATGCCGTGAGACCTTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTG
species | Zea mays |
transcript | GRMZM2G319022_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAAT TTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAAEST: gi|60401400|gb|DN234207.1|DN234207
genomic: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAATgtaagatttt ... atttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAA
EST: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAAT TTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAAEST: gi|71418012|gb|DR804283.1|DR804283
genomic: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAATgtaagatttt ... atttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAA
EST: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAAT TTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAA
genomic: ACTTTGACGAGCCCTGTGCAATTGATTCTGCAGAACTAACTACATTTAATgtaagatttt ... atttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAA
agtgttccactgttccccataatatgtctcttaagatttttttttatttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAATGCCGTGAGACCTTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTG
tttttttttatttgc CT-rich tract
ataatatgtctcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttaccattaaattactagtgttccactgttccccataatatgtctcttaagatttttttttatttgcgtagTTGTGCAAAATGAGTAATCAAAGTCATTCTTCCATTGGTAATTGGATCCAATGCCGTGAGACCTTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG