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...ggaagttctacgcaagcataagttaacttttctttgaccatatcttatgcatttatgaagctacactgtaaatattttggtattgcggaatatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTTCTTTGGGATCCAGTCCATGCTGATTGTGCTGTTCCACAG
species | Zea mays |
transcript | GRMZM2G319022_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAATCCAGGAGATTTTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAG GGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTEST: gi|86470789|gb|DY237159.1|DY237159
genomic: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
EST: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAG GGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTEST: gi|60401400|gb|DN234207.1|DN234207
genomic: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
EST: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAG GGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTEST: gi|211335278|gb|FL441435.1|FL441435
genomic: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
EST: TGTGGAAAATGGAGAAG GGCMCCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTEST: gi|211335279|gb|FL441436.1|FL441436
genomic: TGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
EST: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAG GGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTEST: gi|71418012|gb|DR804283.1|DR804283
genomic: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
EST: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAG GGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
genomic: TTGAATCCAGGAGATTCTGACAAGCAAGTTGTCTGTGGAAAATGGAGAAGgtatgcaaat ... tatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCT
tatgcatttatgaagctacactgtaaatattttggtattgcggaatatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTTCTTTGGGATCCAGTCCATGCTGATTGTGCTGTTCCACAG
taaatattttggtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagttctacgcaagcataagttaacttttctttgaccatatcttatgcatttatgaagctacactgtaaatattttggtattgcggaatatcctgcagGGCACCCTTATATGTTGTACAGTCAGATAATTGGGATTGTTTTTGTTGTCTTCTTTGGGATCCAGTCCATGCTGATTGTGCTGTTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggt