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gtagaaattgttgtcatttttaattcagatgggtttcaaataagaactgtggagtaatcaatctgtcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATCACAAGAAAGCTCATTGGTGAACAT
species | Zea mays |
transcript | GRMZM2G169089_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTG CCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATEST: gi|89248515|gb|DY620301.1|DY620301
genomic: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTGgtagaaattg ... tcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
EST: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTG CCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATEST: gi|101391387|gb|EB817628.1|EB817628
genomic: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTGgtagaaattg ... tcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
EST: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTG CCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATEST: gi|93015559|gb|EB641079.1|EB641079
genomic: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTGgtagaaattg ... tcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
EST: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTG CCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATEST: gi|149037287|gb|EE155331.2|EE155331
genomic: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTGgtagaaattg ... tcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
EST: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTG CCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
genomic: TTTTGGTTTAGTGCAAGATCGCTGGGTGACTGGCCCCTTCTAATGTGCTGgtagaaattg ... tcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGAT
taattcagatgggtttcaaataagaactgtggagtaatcaatctgtcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATCACAAGAAAGCTCATTGGTGAACAT
ttttaat putative branch site (score: 68)
tttcaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaattgttgtcatttttaattcagatgggtttcaaataagaactgtggagtaatcaatctgtcaatttcagCCTCACTCTACCAGTTTTCCCACTAGTTGCACTCATGGCTGAGAAGCTGATCACAAGAAAGCTCATTGGTGAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA