1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...attccatcattacatccataagaacaatactacatcttggatacaatgtaccttccactgttttcacataggctgacactggttgatgtctgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAATG
species | Zea mays |
transcript | GRMZM2G169089_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|17931277|gb|BM268237.1|BM268237
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: ATCATGTTTCAG AEST: gi|17931277|gb|BM268237.1|BM268237
genomic: ATCATGTTTCAGgtatagaaat ... tgactcacag-
EST: ATCATGTTTCAG AEST: gi|17930011|gb|BM266971.1|BM266971
genomic: ATCATGTTTCAGgtatagaaat ... tgactcacag-
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18165097|gb|BM334936.1|BM334936
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|32929949|gb|CF034761.1|CF034761
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGGTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18172967|gb|BM348355.1|BM348355
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|113703224|gb|EE680728.1|EE680728
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|261490382|gb|GO359873.1|GO359873
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18168645|gb|BM338485.1|BM338485
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18171503|gb|BM341343.1|BM341343
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18166786|gb|BM336625.1|BM336625
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: GGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAGGATATCTCCATGGTACGTTCAAGCATGTAEST: gi|18171057|gb|BM340897.1|BM340897
genomic: GGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: GGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18162243|gb|BM332082.1|BM332082
genomic: GGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTATGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|17929613|gb|BM266573.1|BM266573
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|16921179|gb|BM075023.1|BM075023
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: ATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|16921463|gb|BM075161.1|BM075161
genomic: ATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18166090|gb|BM335929.1|BM335929
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18167616|gb|BM337456.1|BM337456
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TTTCAAATTCTGGGCATTTTCTGGAATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|17930787|gb|BM267747.1|BM267747
genomic: TTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTATGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAEST: gi|18166675|gb|BM336514.1|BM336514
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
EST: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAG ATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
genomic: TGCCGTGCCACATTTTCAAATTCTGGGCATTTTCTGGGATCATGTTTCAGgtatagaaat ... tgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTA
atgtaccttccactgttttcacataggctgacactggttgatgtctgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAATG
gtctgac putative branch site (score: 19)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccatcattacatccataagaacaatactacatcttggatacaatgtaccttccactgttttcacataggctgacactggttgatgtctgactcacagATACCGTTGGTATTCTTGACAAGATATCTCCATGCTACGTTCAAGCATGTAATG
- - - - - -acatcca
- - - - - - - - - - - aacaata
- - - - - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg