1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TACTGGAGGATGTGGAACATGgtaatctttttgttacttctatattcagattctatacccttttatttagttgagactttgttacttaactaaggacagttgtgatggtagtggtactcttctatttagttaagacttccttaacttctgtcactgagcttgagatatttgtctaataatatctttcaaataactgacaattagtctattttttgtcag
species | Zea mays |
transcript | GRMZM2G169089_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACTGGAGGATGTGGAACATG CCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAAEST: gi|113703224|gb|EE680728.1|EE680728
genomic: ACTGGAGGATGTGGAACATGgtaatctttt ... tttttgtcagCCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAA
EST: AGAGTACTGGAGGATGTGGAACATG CCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAAEST: gi|261490382|gb|GO359873.1|GO359873
genomic: AGAGTACTGGAGGATGTGGAACATGgtaatctttt ... tttttgtcagCCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAA
EST: AGAGTACTGGAGGATGTGGAACATG CCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAA
genomic: AGAGTACTGGAGGATGTGGAACATGgtaatctttt ... tttttgtcagCCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGGAGGATGTGGAACATGgtaatctttttgttacttctatattcagattctatacccttttatttagttgagactttgttacttaactaaggacagttgtgatggtagtggtactcttctatttagttaagacttccttaacttctgtcactgagcttgagatatttgtctaataatatctttcaaataactgacaattagtctattttttgtcag
- TGGAGG
- - GGAGGA
- - GAGGAT
- - - AGGATG