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CCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgcttctatatgtgtacaaaactctacatttgttctttgcttttgaattctccaaatgcagtttagtttggaacatcgatgcaatatagaattca...
species | Zea mays |
transcript | GRMZM2G169089_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|17930011|gb|BM266971.1|BM266971
genomic: CATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: TTTTCCATGTATAAGAAAAGGCTTTTCCAGGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|18165097|gb|BM334936.1|BM334936
genomic: TTTTCCATGTATAAGGAAAGGCTTTTCCA-GGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|32929949|gb|CF034761.1|CF034761
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCA-GGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGGTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|18172967|gb|BM348355.1|BM348355
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|113703224|gb|EE680728.1|EE680728
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|261490382|gb|GO359873.1|GO359873
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|18168645|gb|BM338485.1|BM338485
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: ATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|18171503|gb|BM341343.1|BM341343
genomic: ATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|16921463|gb|BM075161.1|BM075161
genomic: GGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: ATCATCAGACACATATATCTTCCATGTATAAGGAAAGGCTTTTCCAGG GGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|17930787|gb|BM267747.1|BM267747
genomic: ATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: ATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTTCAGG GGTGTAGCTAATCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAGEST: gi|18166675|gb|BM336514.1|BM336514
genomic: ATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
EST: AAGGCTTTTCCAGG GGTGTAGCTAATCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
genomic: AAGGCTTTTCCAGGgtaattgctt ... tacactgcagGGTGTAGCTATTCTAATCTCGTTTCTGGTTTCAGCTGTATTCCATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTTCATAAGTGGATCATCAGACACATATATTTTCCATGTATAAGGAAAGGCTTTTCCAGGgtaattgcttctatatgtgtacaaaactctacatttgttctttgcttttgaattctccaaatgcagtttagtttggaacatcgatgcaatatagaattca
- - - - - - - - - - - - - - - - - - - - - - AAGGAA