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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattcaactttgtacatcaacagaagctgaacatctgcagccagagaccgttcgagtgtctgacagccgtttaccctttttttcagCTCAATATCGTCCGTGCTATCGGGGACAATCGGGATACATTACGGGCATGTTCTGATCCATTTCAAG

Basic information

species Zea mays
transcript GRMZM2G161852_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481447|gb|EY254551.1|EY254551
EST:     GATGCGCCGGCGTGGTGCCTCGCGCCTTTTGAGCCGGAAGGCTTGTTAAG                         CTCAATATCGTCCGTGCTATCGGGGACAATCGGGATACATTACGGGCATGT
genomic: GATGCGCCGGCGTGGTGCCTCGCGCCTTTTGAGCCGGAAGGCTTGTTAAGgtcattcaac ... tttttttcagCTCAATATCGTCCGTGCTATCGGGGACAATCGGGATACATTACGGGCATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctgcagccagagaccgttcgagtgtctgacagccgtttaccctttttttcagCTCAATATCGTCCGTGCTATCGGGGACAATCGGGATACATTACGGGCATGTTCTGATCCATTTCAAG
                          gtctgac  putative branch site (score: 3)
                                   ccgtttaccctttttt  putative PPT
                                             tttttttca  TA-rich tract