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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacgtacggctggaggttattaatttttggcgtaatataagaacatggttttgtagccggttttgttctttctgtttctgcagGTCAATTGGATCGTGAAGCATGTGTTCGTCAATGTCTGGCACTCCCAGCGGCTTGGAACCCTGCTGTATGTCATGTTCTGTGAGATTGTGTTCTGGGGTG

Basic information

species Zea mays
transcript GRMZM2G161852_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161852_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os11g14080.1 (Oryza sativa), 3'ss of exon 10
-----------------------gtaagtaacgtacggctggaggttattaatttttg-gcgtaatataagaacatggttttgtagccggttttgttctttctgtt--------tctgcagGTCAATTGGATCGTGAAGCATGTGTTCGTCAATGTCTGGCACTCCCAGCGGCTTGGAACCCTGCTGTATGTCATGTTCTGTGAGATTGTGTTCTGGGGTG
                        |   |||   |       ||  |  | |  | |    | ||  |    |||||  |||| |   |||||  | | ||   |         ||||||||| |  ||||||  ||||||||||||  ||||||| |||||||| ||  || | ||||| |||||||||||||| ||  | |||||||| ||||||||||
gtaagtaactttgttgcaagtttatttttaatccatcatgacagcatggtgacatctacaggcaaagttttgacatgagtttg-atttggtttaatccattacctaaaaaaaaatctgcagGTTAGCTGGATCCAGAAGCATGTGTTTATCAATGTATGGCACTCACAAAGGTTGGGAACACTGCTGTATGTCATATTTGGGGAGATTGTCTTCTGGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481447|gb|EY254551.1|EY254551
EST:     TGGCCGCATTTGTCAATGGATGGTACTACGGGTCGCCAGATAACACTCTT                         GTCAATTGGATCGTGA-GCAATGTGTTC
genomic: TGGCCGCATTTGTCAATGGATGGTACTACGGGTCGCCAGATAACACTCTTgtaagtaacg ... gtttctgcagGTCAATTGGATCGTGAAGCA-TGTGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgtaatataagaacatggttttgtagccggttttgttctttctgtttctgcagGTCAATTGGATCGTGAAGCATGTGTTCGTCAATGTCTGGCACTCCCAGCGGCTTGGAACCCTGCTGTATGTCATGTTCTGTGAGATTGTGTTCTGGGGTG
                                ttttgttctttctgtt  CT-rich tract
     aatataagaa  TA-rich tract