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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGCCTGGAGCAAGCCTGCAACGCGGTTGGCTATGTTGACAGGCAGGTCTGGGGGATCAATCATCTCTACACACAGCCAGTTTGGATCCGATCTAAGgtagtacagtgtcattcccactgctcgccattgtcactgatccttatctttcctcagccacactgagtattctgttctactggacgtctgaaattactctgatcag

Basic information

species Zea mays
transcript GRMZM2G161852_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161852_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g14080.1 (Oryza sativa), 5'ss of exon 7
-GGCCAGCCTGGAGCAAGCCTGCAACGCGGTTGGCTATGTTGACAGGCAGGTCTGGGGGATCAATCATCTCTACACACAGCCAGTTTGGATCCGATCTAAGgtagtacagtgtcat-tcccactgctcgccattgtcactgatccttatctttcctcagccacactgagtattctgttctactggacg----tctgaaattactctgatcag
 || ||  ||||| |  ||||||||||| ||||| |||||||| |||  ||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| | | ||| || |  || || ||     |||     ||  || || |||   |  ||     |  ||| |||| |  |   |      ||| ||  |||||||    
AGGTCA-TCTGGACCCTGCCTGCAACGCAGTTGGTTATGTTGATAGGGTGGTTTGGGGAATCAATCATCTCTACACGCAGCCAGTTTGGATCCGATCAAAGgtagaa-actgtaatcttgcaatgatca--gatgta--caatatttgtccttctgtaatcaagtgcaaaattttgttttgttaacctgtaccctgcaa--actctga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481447|gb|EY254551.1|EY254551
EST:     TCTGGGGGATCAATCATCTCTACACACAACCAGTTTGGATCCGATCTAAG                         GATTGCACATCGAGCTCACCTAACATGGGTCCCCTGCGATTTGATGCGCCG
genomic: TCTGGGGGATCAATCATCTCTACACACAGCCAGTTTGGATCCGATCTAAGgtagtacagt ... ctctgatcagGATTGCACATCGAGCTCACCTAACATGGGTCCCCTGCGATCTGATGCGCCG