Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcttgtctctacattttagacacgaaacctcttcgatgccatctcgcagaaaaacaagaaataaaaaaacaaaagctttacaattgttcttgaatggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGCATGAACGCCATGCTTGTGTTTGTCCTAGGCGCGCAGGGAATATTGGCCG

Basic information

species Zea mays
transcript GRMZM2G161852_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161852_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os11g14080.1 (Oryza sativa), 3'ss of exon 9
gtacggcttgtctctac-attttagacacgaaacctcttcgatgccatctcgcagaaaaacaagaaataaaaaaacaaaagctttacaattgttcttgaatggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGCATGAACGCCATGCTTGTGTTTGTCCTAGGCGCGCAGGGAATATTGGCCG
    |||   |||  || |     || | | ||  ||     |  ||| |    ||   |    || |  |   |   |  ||  |  ||| || ||  ||  | ||||||||||||||||||| || || |||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||  || |||| ||||||  | |
---aggcccatctaaacgaggcctgatatggaatttcagtact--cattttcatgaccgattttaattttatttattta--ctggattattatttttttattaatagATTGATGTCTGGGGACTAAGAACACCATTCTTGTTCCTGGAGTGGATTGGCATGAATGCCATGCTTGTGTTTGTTCTAGCAGCACAGGCAATATTTCCAG

upper sequence: GRMZM2G161852_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA03G34220.1 (Glycine max), 3'ss of exon 11
--------------gtacggcttgtctctacattttagacacgaaacctcttcgatgccatctcgcagaaaaacaagaaataaaaaaacaaaagctttacaattgttcttgaa---tggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGCATGAACGCCATGCTTGTGTTTGTCCTAGGCGCGCAGGGAATATTGGCCG
                |       ||| |  | ||     |  ||   | ||  ||    || | ||          |  |   |    |  |   | |       |||||||   |  |||||| ||||| ||||| ||  | || |||||||| ||| ||||||||||||| ||||| || ||||| ||||||||  | |  ||| |||| || || || |
gtaggtacaagtgaaaaaaaaaaatcttttgagtt--agtattaataattttttattttttcccccattttggttttatctctcattggatgattctgatctacactcttgaaaattaaacagATCGATGTTTGGGGGCTCCGCACACCATTCCTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCGGAGGGCATCTTTGCAG

upper sequence: GRMZM2G161852_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv08s0007g04880.t01 (Vitis vinifera), 3'ss of exon 11
-------------------gtacggc-ttgtctctacattttagacacgaaacctcttcgatgccatctcgcagaaaaacaagaaataaaaaaacaaaa-gctttacaattgttcttgaatggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGCATGAACGCCATGCTTGTGTTTGTCCTAGGCGCGCAGGGAATATTGGCCG
                    |      ||| |  |   || | |   | ||     ||   |      || ||| | || ||    |       |  |  |  ||     | ||| ||| |  |||||||||||| |||||| |  |||| |||||| | ||||| |||||||| || ||||| || ||||| ||||||||  | |  || ||||| || || ||||
gtaaaacagttcaatccagatgaaatattgacatttttttctggtttcaaagataattaattatagaatcccaggagaataatttgttttttttcccattgtgttcttcctcttcatgagtaaacagATTGATGTTTGGGGATTTCGGACACCATTCTTATTCCTAGAGTGGATTGGAATGAATGCAATGCTAGTGTTTGTGATGGCAGCTCAGGGTATCTTCGCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481447|gb|EY254551.1|EY254551
EST:     GCTTCACAGGCGGCGCGGCAGGAATTGTTCTCTCGGCTTTCTATATACTG                         ATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGC
genomic: GCTTCACAGGCGGCGCGGCAGGAATTGTTCTCTCGGCTTTCTATATACTGgtacggcttg ... gaatggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaaaaacaagaaataaaaaaacaaaagctttacaattgttcttgaatggacagATTGATGTCTGGGGACTGAGGACGCCATTCCTCTTCCTGGAGTGGATAGGCATGAACGCCATGCTTGTGTTTGTCCTAGGCGCGCAGGGAATATTGGCCG
            aaataaaaaaacaaaa  TA-rich tract