1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaaatgggaatattaatcattccttcttaaaaaaaattcttgcatgtttatttagtagtatgtactcttttgaag
species | Zea mays |
transcript | GRMZM2G161087_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGTCTGAGCTGCTGGACAATTCTCTTGACCAA GTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAAEST: gi|78121690|gb|DV540074.1|DV540074
genomic: GCTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaa ... tcttttgaagGTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAA
EST: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAA GTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAAEST: gi|71772592|gb|DR970521.1|DR970521
genomic: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaa ... tcttttgaagGTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAA
EST: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAA GTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAAEST: gi|211002749|gb|FL375709.1|FL375709
genomic: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaa ... tcttttgaagGTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAA
EST: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAA GTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAA
genomic: CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaa ... tcttttgaagGTTATAAATGGAGCTACCTATGTGAACATAGATGTGTTAGAGAATGATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGGCTGAGCTGCTGGACAATTCTCTTGACGAAgtaagcttaaatgggaatattaatcattccttcttaaaaaaaattcttgcatgtttatttagtagtatgtactcttttgaag
- - - - AGCTGC
- - - - - GCTGCT
- - - - - - GCTGGA