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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCAACTCAGAGGTGGTAATCGTGATGAGAAAAATATCCAGATGGCAAATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCATTCATTGAGAgtaagtttgatgtatgcatactctagttgctggtaacttgatgatgtgatgtatataattgatcttttttattgtgttatacttgttataacctaagcac...

Basic information

species Zea mays
transcript GRMZM2G161087_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022603|gb|CO451352.1|CO451352
EST:     ATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCATTCATTGAGA                         AGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTTCCAAAATGAT
genomic: ATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCATTCATTGAGAgtaagtttga ... ttttttgcagAGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTTCCAAA-TGAT
EST: gi|76917044|gb|DV166651.1|DV166651
EST:     ATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCATTCATTGAGA                         AGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTTCCAAATGATT
genomic: ATCAGTTCCCAAACTCCAAGCATTACCTCACATATAGGCATTCATTGAGAgtaagtttga ... ttttttgcagAGTTATGCATCAATTTTGTATTTGCGACTTCCGACTTACTTCCAAATGATT