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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTCTGCAACCAAGGAACAGGAGGCGCTGATCGACATCTTCTCAGAAGAAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaacaaactgactgatggaaagtcgcagcacaacatgaaccttttgtttcttgcacttctgaacattttcttgcaacttattccctctttggcag

Basic information

species Zea mays
transcript GRMZM2G161087_T02
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934996|gb|CF039808.1|CF039808
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|87155360|gb|DY400149.1|DY400149
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|32931261|gb|CF036073.1|CF036073
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAGGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|32933316|gb|CF038128.1|CF038128
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|22546559|gb|BU098870.1|BU098870
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|26559353|gb|CA831588.1|CA831588
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|32934128|gb|CF038940.1|CF038940
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|113701833|gb|EE679337.1|EE679337
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|32932425|gb|CF037237.1|CF037237
EST:     AAGGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGTTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|5847566|gb|AW000645.1|AW000645
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCNCCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|76917042|gb|DV166650.1|DV166650
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
EST: gi|71772591|gb|DR970520.1|DR970520
EST:     AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAG                         GACGCATCTTCCCCCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG
genomic: AAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaac ... tctttggcagGACGCATCTTCCACCATACAGGATTTGCTGGAGCAACTGAATGCTGCCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTCTGCAACCAAGGAACAGGAGGCGCTGATCGACATCTTCTCAGAAGAAAGGAACCGACGAGACCAAGAAGAGGAGAGCCTGAGGAAGAAGCTGAAGgtgagtgaacaaactgactgatggaaagtcgcagcacaacatgaaccttttgtttcttgcacttctgaacattttcttgcaacttattccctctttggcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG