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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCAAAGATGGAAGAATCGATGTCGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctcttctgtcttttctgcgtactgttttgctgtaacaaatattgttgcttgacctaaaagagtgagaatgcccactgttatgtttgacctaaaaa...

Basic information

species Zea mays
transcript GRMZM2G161087_T02
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934996|gb|CF039808.1|CF039808
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|87155360|gb|DY400149.1|DY400149
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|32931261|gb|CF036073.1|CF036073
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAATCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|32933316|gb|CF038128.1|CF038128
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|22546559|gb|BU098870.1|BU098870
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|26559353|gb|CA831588.1|CA831588
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|32934128|gb|CF038940.1|CF038940
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|113701833|gb|EE679337.1|EE679337
EST:     CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|32932425|gb|CF037237.1|CF037237
EST:     CCCAAGAGCTAGTGGTTGAGCGTGACAAGAATAAATCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCA
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|5847566|gb|AW000645.1|AW000645
EST:     CGCAAGAGCTAGTGGTTGAGTGTGCCAAGACCAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
EST: gi|71772591|gb|DR970520.1|DR970520
EST:     CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGG                         GTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG
genomic: CGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctctt ... tatttttcagGTGGAGGATCTGCAGAGACAACTTGAGTCTGCAACCAAGGAACAGGAGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATCAAAGATGGAAGAATCGATGTCGCAAGAGCTAGTGGTTGAGTGTGACAAGAACAAGTCTTTGACAGAGAGGgtatgctcttctgtcttttctgcgtactgttttgctgtaacaaatattgttgcttgacctaaaagagtgagaatgcccactgttatgtttgacctaaaaa

- - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG