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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccctcagctgcttctgttttatcagattgcaaagcctcttttcctacattacattcagttctggtatctatttggtttttggctattgtgcagc...

Basic information

species Zea mays
transcript GRMZM2G153984_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60350258|gb|DN217231.1|DN217231
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|74244863|gb|DT652777.1|DT652777
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|71328008|gb|DR800651.1|DR800651
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|148969030|gb|EE019740.2|EE019740
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|110515150|gb|EE019739.1|EE019739
EST:     ATGTGGACATGTCCACTGTTGCCGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|61118227|gb|DN559188.1|DN559188
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|148969718|gb|EE020590.2|EE020590
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|78092309|gb|DV520683.1|DV520683
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|61118228|gb|DN559189.1|DN559189
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|78084019|gb|DV512412.1|DV512412
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|101382897|gb|EB813502.1|EB813502
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|78119858|gb|DV538242.1|DV538242
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|211111950|gb|FL269638.1|FL269638
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGGAAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTG-AAGC
EST: gi|61118229|gb|DN559190.1|DN559190
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|28931022|gb|CB334383.1|CB334383
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|71439692|gb|DR820742.1|DR820742
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGGTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|89764409|gb|DY691230.1|DY691230
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|50326300|gb|CO521426.1|CO521426
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|149051791|gb|EE155917.2|EE155917
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|50334992|gb|CO530118.1|CO530118
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|71448020|gb|DR829070.1|DR829070
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|149075802|gb|EE164336.2|EE164336
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|20512919|gb|BQ280105.1|BQ280105
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|28873957|gb|CB329877.1|CB329877
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTACCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|149081805|gb|EE170963.2|EE170963
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|148954590|gb|EC900032.2|EC900032
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|149079137|gb|EE168066.2|EE168066
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|89762144|gb|DY689877.1|DY689877
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|71328007|gb|DR800650.1|DR800650
EST:     CAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: CAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|76917423|gb|DV166839.1|DV166839
EST:     ATGTCCACTGTGGACGCTGCAACTTCGGCCAAG-TTAGCGGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAG
genomic: ATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGC-GAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAG
EST: gi|211111949|gb|FL269637.1|FL269637
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|60355928|gb|DN222901.1|DN222901
EST:     GACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: GACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|22133534|gb|BQ833766.1|BQ833766
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|76917425|gb|DV166840.1|DV166840
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|93013137|gb|EB638657.1|EB638657
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|149073536|gb|EE161839.2|EE161839
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|22819821|gb|BU499911.1|BU499911
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|148967444|gb|EE018674.2|EE018674
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|20811286|gb|BQ295764.1|BQ295764
EST:     ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|211111945|gb|FL269633.1|FL269633
EST:     ATGTGGACATGTCCACTGTAGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAACGGGGAGCTTTCCTTGAACCTCCAGTTTCACGGAGC
genomic: ATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
EST: gi|78125845|gb|DV544229.1|DV544229
EST:     GTTGACGCTGCAACTTCGACCAAGATTAGCGAG                         GCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC
genomic: GTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 262

CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGCAAGAAGCCAGCTGAAGATGGCCAATTGGTCATTCTTGCTGCAGGGGACA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 272

CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGCAAGAAGCCAGCTGAAGATGGCCAATTGGTCATTCTTGCTGCAGGGGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 184

CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGCAAGAAGCCAGCTGAAGATGGCCAATTGGTCATTCTTGCTGCAGGGGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 195

CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccct ... atttttgcagGCAGTTAAACAAAAAGGGGGAGCTTTCCTTGAAGCTCCAGTTTCAGGGAGCAAGAAGCCAGCTGAAGATGGCCAATTGGTCATTCTTGCTGCAGGGGACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCTTCGACAAGGATGGCGTGCTCGAGCAGATCGGTAGCGGGAAGGGCTATGTGGACATGTCCACTGTTGACGCTGCAACTTCGACCAAGATTAGCGAGgtatctccctcagctgcttctgttttatcagattgcaaagcctcttttcctacattacattcagttctggtatctatttggtttttggctattgtgcagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcagc