1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttatttgacgtattggttgaatgcttttaagcttaaaaaggatttagaaagcataaactcgcattgactaatgtatcttgtattcttgtcatttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCAACAAAGCGCTTGAGTTGATGCTAGAAAACAAGTGCTTGAGATGTGTGA
species | Zea mays |
transcript | GRMZM2G149272_T06 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAACCTAAATCTGATTCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5325210|gb|AI783401.1|AI783401
genomic: GAAACCTAAATCTGA-TCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|67012049|gb|CO440798.1|CO440798
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|6342730|gb|AW165554.1|AW165554
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211322359|gb|FL445870.1|FL445870
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5895724|gb|AW036970.1|AW036970
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|94474409|gb|EB703367.1|EB703367
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5860434|gb|AW011656.1|AW011656
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCGGGGGATACCATTCAATGAAATCEST: gi|84969909|gb|DW468311.1|DW468311
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: ATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5650119|gb|AI920479.1|AI920479
genomic: ATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|148957214|gb|EC903224.2|EC903224
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: TCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|67013266|gb|CO442015.1|CO442015
genomic: TCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211242574|gb|FL481994.1|FL481994
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211240359|gb|FL481993.1|FL481993
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211242575|gb|FL481995.1|FL481995
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
tagaaagcataaactcgcattgactaatgtatcttgtattcttgtcatttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCAACAAAGCGCTTGAGTTGATGCTAGAAAACAAGTGCTTGAGATGTGTGA
gactaat putative branch site (score: 2)
ttcttgtc putative PPT
taatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatttgacgtattggttgaatgcttttaagcttaaaaaggatttagaaagcataaactcgcattgactaatgtatcttgtattcttgtcatttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCAACAAAGCGCTTGAGTTGATGCTAGAAAACAAGTGCTTGAGATGTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG