Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATGTAA

Basic information

species Zea mays
transcript GRMZM2G149272_T06
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149272_T06 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42520.3 (Oryza sativa), 3'ss of exon 7
gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATGTAA
                                                                                          | |  | | |    || |   | || | | ||||     |  | ||  |  |    |||   | |    |   ||||  |   |  | ||||||| ||| |||||  | ||  || | ||  ||||||| |  |||||||| ||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||||||
------------------------------------------------------------------------------------------tcaacagctcctgttgcactgg-tgtccaattggtagtttctaaaatcttgatcatatccctgatatacaca-gcataaagacat-tgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGTAA

upper sequence: GRMZM2G149272_T06 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 3'ss of exon 7
gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATGTAA
                                                                                          | |  | | |    || |   | || | | ||||     |  | ||  |  |    |||   | |    |   ||||  |   |  | ||||||| ||| |||||  | ||  || | ||  ||||||| |  |||||||| ||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||    
------------------------------------------------------------------------------------------tcaacagctcctgttgcactgg-tgtccaattggtagtttctaaaatcttgatcatatccctgatatacaca-gcataaagacat-tgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873431|gb|EB403388.1|EB403388
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGA
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGA
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGATGAAGGGGTGGATTACTCATTTGAAT
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAAT
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|211242575|gb|FL481995.1|FL481995
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATGTAA
                                      ttttttcat  CT-rich tract
                              taagtagatttttt  TA-rich tract