1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcag
species | Zea mays |
transcript | GRMZM2G149272_T06 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGEST: gi|71769715|gb|DR967652.1|DR967652
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG GTAATCAAAAGGATTACTGAEST: gi|76921975|gb|DV168787.1|DV168787
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGA
EST: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG GTAATCAAAAGGATTACTGATGAAGGGGTGGATTACTCATTTGAATEST: gi|148958260|gb|EC904476.2|EC904476
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAAT
EST: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGEST: gi|78087855|gb|DV516248.1|DV516248
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGEST: gi|211242575|gb|FL481995.1|FL481995
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGEST: gi|76016068|gb|DT943238.1|DT943238
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcag
- - - - - - - - - - - - - - - - CAGATG