1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG
species | Zea mays |
transcript | GRMZM2G149272_T06 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|71769715|gb|DR967652.1|DR967652
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAAGCA-GAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76921975|gb|DV168787.1|DV168787
genomic: GCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAA-GCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|148958260|gb|EC904476.2|EC904476
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|78087855|gb|DV516248.1|DV516248
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|211242575|gb|FL481995.1|FL481995
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76016068|gb|DT943238.1|DT943238
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
gttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG
tgttaat putative branch site (score: 3)
ttttgttcct putative PPT
tttgtgttaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG