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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT

Basic information

species Zea mays
transcript GRMZM2G149272_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149272_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42520.3 (Oryza sativa), 3'ss of exon 7
gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT----
                                                                                          | |  | | |    || |   | || | | ||||     |  | ||  |  |    |||   | |    |   ||||  |   |  | ||||||| ||| |||||  | ||  || | ||  ||||||| |  |||||||| ||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||    
------------------------------------------------------------------------------------------tcaacagctcctgttgcactgg-tgtccaattggtagtttctaaaatcttgatcatatccctgatatacaca-gcataaagacat-tgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATGTAA

upper sequence: GRMZM2G149272_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 3'ss of exon 7
gtatttacaccatgcaattggtcatctgctcatcgctctcttttggtatcatgcaattctgcttgactgctacactaataaactgttgacttataatcacactatgtatgagatgactatttggggaaataaacaaaatacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT
                                                                                          | |  | | |    || |   | || | | ||||     |  | ||  |  |    |||   | |    |   ||||  |   |  | ||||||| ||| |||||  | ||  || | ||  ||||||| |  |||||||| ||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||
------------------------------------------------------------------------------------------tcaacagctcctgttgcactgg-tgtccaattggtagtttctaaaatcttgatcatatccctgatatacaca-gcataaagacat-tgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71331902|gb|DR802836.1|DR802836
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|211510916|gb|FL028116.1|FL028116
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|60401092|gb|DN233899.1|DN233899
EST:     GAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|14203856|gb|BG837533.1|BG837533
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGA
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGA
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGA
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGA
EST: gi|6095609|gb|AW120276.1|AW120276
EST:     CAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: CAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|29945503|gb|CB815672.1|CB815672
EST:     GTGTCCCGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGATGAAGGGGTGGATTACTCATTTGAAT
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAAT
EST: gi|5296121|gb|AI782996.1|AI782996
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|89246725|gb|DY618512.1|DY618512
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|5847100|gb|AW000179.1|AW000179
EST:     CCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: CCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|6194720|gb|AW146824.1|AW146824
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|5895803|gb|AW037049.1|AW037049
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|5895869|gb|AW037115.1|AW037115
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|71769714|gb|DR967651.1|DR967651
EST:     CTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: CTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|211510917|gb|FL028117.1|FL028117
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|5901133|gb|AW042233.1|AW042233
EST:     CGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: CGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|148963165|gb|EE014137.2|EE014137
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGT
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGT
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTTCA-CAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT
genomic: TGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTT-CAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATT
EST: gi|76016067|gb|DT943237.1|DT943237
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTAGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|71325642|gb|DR799508.1|DR799508
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
EST: gi|6020665|gb|AW065698.1|AW065698
EST:     GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAG                         GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG
genomic: GTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACCTGTTCAACAGgtatttacac ... atgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagtgcatcatcgttccctaagtgcatgtaagtagattttttcatgcttgcagGTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT
                                      ttttttcat  CT-rich tract
                              taagtagatttttt  TA-rich tract