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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCGGTGCAGTCTGGAATGTAGCTAATGTATCAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatctacataagggtccattataagttaattcttacatatcaagaactgttgtaacgagacctatgtctgctgagttag

Basic information

species Zea mays
transcript GRMZM2G149272_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087348|gb|DV515741.1|DV515741
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGATCGTAGGACTTTCT                         GTCGCTCANGGTGCTAA
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAA
EST: gi|211510916|gb|FL028116.1|FL028116
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|14203856|gb|BG837533.1|BG837533
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|5296121|gb|AI782996.1|AI782996
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|71331903|gb|DR802837.1|DR802837
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCT
EST: gi|6194720|gb|AW146824.1|AW146824
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|5895803|gb|AW037049.1|AW037049
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|5895869|gb|AW037115.1|AW037115
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|211510917|gb|FL028117.1|FL028117
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|71325644|gb|DR799509.1|DR799509
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCCAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|148963165|gb|EE014137.2|EE014137
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|71325642|gb|DR799508.1|DR799508
EST:     GGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: GGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
EST: gi|6020665|gb|AW065698.1|AW065698
EST:     CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCT                         GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT
genomic: CAAAGGGCTCAAGTGTAGCTATATTTGGTCTTGGGACCGTAGGACTTTCTgtgagtatct ... gctgagttagGTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGAT