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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttagctgagagcctgagacaaacgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacat

Basic information

species Zea mays
transcript GRMZM2G149272_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149272_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g42520.3 (Oryza sativa), 5'ss of exon 2
GGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttagctgagagcctgagacaaacgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacat
||||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    |||||||||| |||| ||    ||||  |       | || ||  | |  |    | ||  ||||||   |||||   | ||  || ||    ||  ||    || |   |                                                                                                 
GGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTCCATCTGCCGCAGTGACGTCACCCAGTGGCAATCCACGgtacgc----cggcctctctagctctgcttc--catccagcccgata--ctcctg---atgcgc--tcatcgattttgctgctgttt--ccgaaacgcag------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087348|gb|DV515741.1|DV515741
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211026991|gb|FL377493.1|FL377493
EST:     TCGTCTCCACCTCCGTCTGCCGCAGNGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89755821|gb|DY686098.1|DY686098
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211199112|gb|FL383376.1|FL383376
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89252932|gb|DY624718.1|DY624718
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71448196|gb|DR829246.1|DR829246
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|149083974|gb|EE173360.2|EE173360
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284822|gb|FL429278.1|FL429278
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284823|gb|FL429279.1|FL429279
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|29946549|gb|CB816205.1|CB816205
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211323238|gb|FL374213.1|FL374213
EST:     TCGTCTCCACCTCCGTCTGCCGCAGSGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71331903|gb|DR802837.1|DR802837
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211539558|gb|FL409998.1|FL409998
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211228051|gb|FL407860.1|FL407860
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71325644|gb|DR799509.1|DR799509
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|148963165|gb|EE014137.2|EE014137
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|93016182|gb|EB641702.1|EB641702
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211063859|gb|FL423538.1|FL423538
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|101382109|gb|EB813110.1|EB813110
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG