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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttagctgagagcctgagacaaacgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG

Basic information

species Zea mays
transcript GRMZM2G149272_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087348|gb|DV515741.1|DV515741
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211026991|gb|FL377493.1|FL377493
EST:     TCGTCTCCACCTCCGTCTGCCGCAGNGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89755821|gb|DY686098.1|DY686098
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211199112|gb|FL383376.1|FL383376
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GC-G-C--AACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89252932|gb|DY624718.1|DY624718
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71448196|gb|DR829246.1|DR829246
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|149083974|gb|EE173360.2|EE173360
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284822|gb|FL429278.1|FL429278
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284823|gb|FL429279.1|FL429279
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|29946549|gb|CB816205.1|CB816205
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211323238|gb|FL374213.1|FL374213
EST:     TCGTCTCCACCTCCGTCTGCCGCAGSGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71331903|gb|DR802837.1|DR802837
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211539558|gb|FL409998.1|FL409998
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211228051|gb|FL407860.1|FL407860
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71325644|gb|DR799509.1|DR799509
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|148963165|gb|EE014137.2|EE014137
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|93016182|gb|EB641702.1|EB641702
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211063859|gb|FL423538.1|FL423538
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|101382109|gb|EB813110.1|EB813110
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCC-A-                         --AGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... attccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacatGCAGGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
          ctctgat  putative branch site (score: 4)
                                   ttctcttccaattcc  putative PPT
                   aattt  TA-rich tract