1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgaaactgccttcatcccttgtgcccacacataccctgtatattcatagtacttttgtacttcatttgaaatccttaccaatttatctattcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCTACTGTTGGCTGTTATCTACTACCACTTATTTACATGTGGTTACACCTT
species | Zea mays |
transcript | GRMZM2G149224_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCEST: gi|32863056|gb|CF002738.1|CF002738
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCEST: gi|149072463|gb|EE160739.2|EE160739
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: CGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCEST: gi|18450804|gb|BM429082.1|BM429082
genomic: CGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCEST: gi|166483903|gb|EG135197.1|EG135197
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC TTGCAAAAACNGTACTTTGGGAAGAEST: gi|22489855|gb|BU049778.1|BU049778
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGA
EST: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCEST: gi|60337162|gb|DN204135.1|DN204135
genomic: GAATCATAGGAGTATATCAAAGGCTTCAATTTTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
EST: TTCCTCGGGAATGGAAATC TTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
genomic: TTCCTCGGGAATGGAAATCgtatgaaact ... tcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTC
atagtacttttgtacttcatttgaaatccttaccaatttatctattcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCTACTGTTGGCTGTTATCTACTACCACTTATTTACATGTGGTTACACCTT
tccttac putative branch site (score: 81)
tctattc putative PPT
aatttatctattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaactgccttcatcccttgtgcccacacataccctgtatattcatagtacttttgtacttcatttgaaatccttaccaatttatctattcatatgcagTTGCAAAAACAGTACTTTGGGAAGATGCGAAGCAAACTGTGACAGTGCTTCTACTGTTGGCTGTTATCTACTACCACTTATTTACATGTGGTTACACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT