1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttggtctaatatgaaatagatagtatttgcattactcaattgattgattgatgcatgcagtctttgtgcttattccattgcatgtgtttttcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG
species | Zea mays |
transcript | GRMZM2G149224_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211071353|gb|FL056276.1|FL056276
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074089|gb|FL056289.1|FL056289
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|149072461|gb|EE160738.2|EE160738
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211071352|gb|FL056275.1|FL056275
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211071351|gb|FL056274.1|FL056274
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATAEST: gi|211071355|gb|FL056278.1|FL056278
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074087|gb|FL056287.1|FL056287
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074092|gb|FL056292.1|FL056292
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074086|gb|FL056286.1|FL056286
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211071358|gb|FL056281.1|FL056281
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074085|gb|FL056285.1|FL056285
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211074083|gb|FL056283.1|FL056283
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCAEST: gi|211071356|gb|FL056279.1|FL056279
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
EST: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAG CTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
genomic: GGCCGTCTACGTGTCCGCCGACCTCCGTGACAAGGCCCAGGTCGCCAGAGgtgcgtggtc ... tcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCA
gattgatgcatgcagtctttgtgcttattccattgcatgtgtttttcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG
gattgat putative branch site (score: 64)
tttttcatct putative PPT
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtctaatatgaaatagatagtatttgcattactcaattgattgattgatgcatgcagtctttgtgcttattccattgcatgtgtttttcatctgcagCTTTTGAAGGGGCAGAAGTAGTTTTCCATATGGCTGCTCCAGATTCATCCATCAACAACTTCCACCTTCATTATGGAGTCAATGTCGATG
- - - - - - gaaataga
- - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt