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gtaatgaaaatctgtcattcttcacttagacccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
species | Zea mays |
transcript | GRMZM2G149224_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|211480846|gb|FL457134.1|FL457134
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|18650185|gb|BM499004.1|BM499004
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: GGTTGTCAGCATCCTTAGTTCTATGTCTTCTCAGTCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|37381967|gb|CF627894.1|CF627894
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|31364078|gb|CD448433.1|CD448433
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAEST: gi|211446981|gb|FL117889.1|FL117889
genomic: GGTTGTCAGCATCCTTAGTTCCATGTCTTCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
EST: TCTCAGGCTGCATTTAAAATAG GTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
genomic: TCTCAGGCTGCATTTAAAATAGgtaatgaaaa ... tcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACA
atataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
gactgat putative branch site (score: 121)
ttcttgtc putative PPT
aaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaaatctgtcattcttcacttagacccgtgatataagcaacatgaacacatgactgatggtgtgcgaaattcttgtcaacgacagGTACTGCTCTGGTTTTCACAGGCTTCAAAGCGTATGAGAAATGGGAGGACAGCATTGATAGTATGGTGGGCGACGCCTGTACCATTCTTCTGCACTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG