1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caacctacgaaaagaatgaggatggggaatctaaatctgtttcatgtctataccagcaggccagaaaccagtgtactaatgtgtttgaacttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGTAGAATGGACTTACCAGAAATTTGCCAAGTATGGAATGAAAGTTCCTCAG
species | Zea mays |
transcript | GRMZM2G149224_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGTEST: gi|32863056|gb|CF002738.1|CF002738
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGTEST: gi|18450805|gb|BM429083.1|BM429083
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: ATTCTGGGAGTTCATGTCATTGAATTTAAGAAAGGTCTTGGATATGAAAG GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGTEST: gi|149072461|gb|EE160738.2|EE160738
genomic: ATTCTGGGAGTTCATGTCATTG-ATTTTAG-AAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: AATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAAG GC-TTCAGTAAAAATACCCGTCTCCTGT-ATGATGCEST: gi|22489855|gb|BU049778.1|BU049778
genomic: AATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAA-Ggtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTC-TGTTATGATGC
EST: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCAGTGGCTCATGTTGTEST: gi|31364547|gb|CD448902.1|CD448902
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
EST: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAG GCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGCGGCTCATGTTGT
genomic: AAATTCTGGGAGTTCATGTCATTGATTTTAGAAGGTCTTGGATATGAAAGgtattcatgt ... ttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGT
gtctataccagcaggccagaaaccagtgtactaatgtgtttgaacttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGTAGAATGGACTTACCAGAAATTTGCCAAGTATGGAATGAAAGTTCCTCAG
tactaat putative branch site (score: 135)
cttcatt putative PPT
tactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacctacgaaaagaatgaggatggggaatctaaatctgtttcatgtctataccagcaggccagaaaccagtgtactaatgtgtttgaacttcattacagGCCTTCAGTAAAAATACCAGTCTCTGTTATGATGCCGGTGGCTCATGTTGTAGAATGGACTTACCAGAAATTTGCCAAGTATGGAATGAAAGTTCCTCAG
- - - - -aaaagaa
- - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - ccagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt