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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtcagaaccttaatctaaacacctgcagtagtatctttaatgaagggcacatccaaggttagctatccatattgagctttgtgcttcgtatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG

Basic information

species Zea mays
transcript GRMZM2G147268_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351308|gb|CD435665.1|CD435665
EST:     CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG                         TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: gi|32796066|gb|CD948302.1|CD948302
EST:     CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG                         TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: gi|32798915|gb|CD951151.1|CD951151
EST:     CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG                         TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: gi|71761860|gb|DR959797.1|DR959797
EST:     CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG                         TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: gi|32796348|gb|CD948584.1|CD948584
EST:     CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG                         TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggcacatccaaggttagctatccatattgagctttgtgcttcgtatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG
                         atattga  TA-rich tract