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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGGCAGGTTGGAGTTCTTTGTGCCGCTGCTTATGTTGCTGTTCGTGACACCGTGGGAAAGCTTGCGGATGATCACAGGAAGGCTAAAGCCTTGGCAGgtttcaaaaatttagtagtattttctttctttctttcttttgagtccaacttcacttcatttttgttgtgcacagttcacaagcactgaacagcccctct...

Basic information

species Zea mays
transcript GRMZM2G147268_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351308|gb|CD435665.1|CD435665
EST:     CACCGTGGGAAAGCTTGCGGATGATCACAGGAAGGCTAAAGCCTTGGCAG                         AGGGCCTGAACAAAATTAAACAG-TTCACGGTGGATTCATCTTCGGTCGAG
genomic: CACCGTGGGAAAGCTTGCGGATGATCACAGGAAGGCTAAAGCCTTGGCAGgtttcaaaaa ... ttttcctcagAGGGCCTGAAGAAAATTAAACAGCTT-ACGGTGGATTCGTCTTCAGTCGAG
EST: gi|71761860|gb|DR959797.1|DR959797
EST:     CACCGTGGGAAAGCTTGCGGATGATCACAGGAAGGCTAAAGCCTTGGCAG                         AGGGCCTGAAGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGA
genomic: CACCGTGGGAAAGCTTGCGGATGATCACAGGAAGGCTAAAGCCTTGGCAGgtttcaaaaa ... ttttcctcagAGGGCCTGAAGAAAATTAAACAGCTTACGGTGGATTCGTCTTCAGTCGAGA