1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTTCTTTGTGCCGCTGCTTATGTTGCTGTTCGTGACACCGTGGGAAAGCTTG
species | Zea mays |
transcript | GRMZM2G147268_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTTEST: gi|50331297|gb|CO526423.1|CO526423
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
EST: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTTEST: gi|71761860|gb|DR959797.1|DR959797
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
EST: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
aaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTTCTTTGTGCCGCTGCTTATGTTGCTGTTCGTGACACCGTGGGAAAGCTTG
gtctaaa putative branch site (score: 3)
ttaccacccttttc putative PPT
aaaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTTCTTTGTGCCGCTGCTTATGTTGCTGTTCGTGACACCGTGGGAAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT